Difference between revisions of "User:Andreas Plank/Useful Scripts (Linux)"

# ##############################################
# description: get ID and some additional information of api.ror.org via a query match (exact match or match by words)
# dependency: curl
# dependency: jq (JSON tool)
# dependency: awk

# #### returned JSON
# { 
#   "number_of_results": 1,
#   "time_taken": 41,
#   "items": [
#     {
#       "id": "https://ror.org/00bv4cx53",
#       "name": "Botanischer Garten und Botanisches Museum Berlin",
#       "types": [
#         "Archive"
#   …
# }

# #### one entry by exact query phrase
curl -G https://api.ror.org/organizations --data-urlencode 'query="Botanischer Garten und Botanisches Museum Berlin"' | jq . > bgbm.org.json
jq '.items|=sort_by(.name)|.items [] | (.id + "::" + .name)' bgbm.org.json 
# "https://ror.org/00bv4cx53::Botanischer Garten und Botanisches Museum Berlin"

# #### get from multiple result pages
query_string="Botanisch Garten Gärten garden botanical gardens natural naturalis museum"
number_of_results=`curl --silent --get https://api.ror.org/organizations --data-urlencode "query=$query_string" | jq ".number_of_results"`
number_of_pages=`echo "scale=0; ${number_of_results}/20 + 0.5" | bc -l | awk '{printf("%d\n",$1 + 0.5)}'`
if [[ "$number_of_pages" =~ ^[0-9]+$ ]]; then
  for ((p=1; p<=$number_of_pages; p++)); do
  echo "# get content of page $p => ror.org_page-$p.json"
    contents=$(curl --silent --get https://api.ror.org/organizations --data-urlencode "query=$query_string" --data-urlencode "page=$p" )
    echo "$contents" > "ror.org_page-$p.json"
  done
  jq --slurp '{ items: map(.items[]) }' ror.org_page-*.json > ror.org_page-all.json
  # parse multiple files and concatenate the { items : [] }

  # jq '.items|=sort_by(.name)|.items [] | (.id + " :: " + .name + " :: " + .links[0])' ror.org_page-all.json
  jq '.items|=sort_by(.name)|.items [] | (.id + " :: " + .name + " :: " + .links[0] + " :: acronym: " + if .acronyms[0] then .acronyms[0] else "NA" end )' ror.org_page-all.json
  # find in { items : [ {id : … , name : … , links : [ ] }] } and concatenate them via "::"
else
  echo "Something wrong: \$number_of_pages is not an integer ()"
fi

# remove all individually downloaded files ror.org_page-1.json … ror.org_page-123.json etc.
#   rm ror.org_page-[1-9]*.json

# grab single search string via grep
jq '.items|=sort_by(.name)|.items [] | (.id + " :: " + .name + " :: " + .links[0] + " :: acronym: " + if .acronyms[0] then .acronyms[0] else "NA" end )' ror.org_page-all.json | \
  grep --ignore-case mnhn

# #### result list
# "https://ror.org/02ya7hp91 :: ALZHIR Museum and Memorial Complex :: https://museum-alzhir.kz/en :: acronym: NA"
# "https://ror.org/02pvtxb60 :: ASTRA National Museum Complex :: http://www.muzeulastra.ro/ :: acronym: NA"
# …
# "https://ror.org/00bv4cx53 :: Botanischer Garten und Botanisches Museum Berlin :: https://www.bgbm.org/ :: acronym: BGBM"
# …
# "https://ror.org/01h1jbk91 :: Meise Botanic Garden :: https://www.plantentuinmeise.be/en/ :: acronym: NA"
# …
# "https://ror.org/03wkt5x30 :: National Museum of Natural History :: http://www.mnhn.fr/fr :: acronym: MNHN"
# …
# "https://ror.org/0566bfb96 :: Naturalis Biodiversity Center :: http://www.naturalis.nl/ :: acronym: NA"
# …
# "https://ror.org/0349vqz63 :: Royal Botanic Garden Edinburgh :: http://www.rbge.org.uk/ :: acronym: RBGE"
# "https://ror.org/00ynnr806 :: Royal Botanic Gardens :: http://www.kew.org/ :: acronym: NA"
# …
# "https://ror.org/03pjnvf85 :: Zürich Zoological Garden :: https://www.zoo.ch/ :: acronym: NA"
# …
# ##############################################